Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs77804951 chr4:70244580 A/G 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs77898459 chr11:119804499 C/CA 1.28E-8 119 38.83 49.4 12.63 KM Plot
THYM rs77923699 chr20:29516406 C/T 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs77926599 chr11:2271304 C/T 2.58E-6 115 42.9 38.83 25.83 KM Plot
THYM rs77993017 chr11:20031388 C/G 4.03E-6 118 42.73 32.7 13.75 KM Plot
THYM rs7807719 chr7:76134433 C/A 2.94E-5 117 39.5 46.23 28.43 KM Plot
THYM rs78090165 chr4:70065947 C/T 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs78091560 chr11:20032279 G/A 4.03E-6 118 42.73 32.7 13.75 KM Plot
THYM rs78113800 chr2:10962982 G/C 0.000197 119 41.77 38.58 62.72 KM Plot
THYM rs78115779 chr4:70059916 T/C 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs78135523 chr4:70067919 C/A 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs78142425 chr11:133253689 C/G 1.38E-10 117 42.25 52.12 20.9 KM Plot
THYM rs78147985 chr6:72875935 A/C 0.000147 118 38.23 50.12 17.77 KM Plot
THYM rs78187137 chr1:227469050 AG/A 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs78219974 chr2:240842709 G/A 1.75E-12 116 38.83 57.43 12.63 KM Plot